The data and our analysis is described in the manuscript:
S.T. Jensen and J.S. Liu. (2007)
Bayesian Clustering of Transcription Factor Binding Motifs.
Accepted for publication in the Journal of the American Statistical Association
Preliminary Technical Report available at ArXiv
Supplemental Materials are available in the following pdf document:
Supplementary Data Files:
jaspar.pairwise.txt
jaspar.partition.txt
combined.pairwise.txt
combined.partition.txt