Old: Best Clustering has 249 out of 298 motifs in 97 clusters. Numgenes = 136 Logposterior = -41902.9295789086 alpha = 1 iter = 254 Now: 64 clusters containing 152 motifs Cluster 1 size 6 strength 147.725980228146 A 43 consensus aagaaaAgggaG Cluster 1 member 73 gtaB-m1 gtaB align 3 A 5 AaCAaAAGgGAG prob 0.999 Cluster 1 member 125 ydaP-m1:b2 ydaP align 2 A 6 aggccAaaGGAG prob 0.950 Cluster 1 member 129 ydcA-m1:b2 ydcA align 1 A 10 AaGAAaAgggGG prob 1.000 Cluster 1 member 158 cotX-m1:b2 cotX align 0 A 6 AataaAaggAaG prob 1.000 Cluster 1 member 192 ypiB-m1:b2 ypiB align 3 A 14 aaGacaAggGgg prob 1.000 Cluster 1 member 268 narK-m2:b2 narK align 2 A 2 AgccAAAcaGGa prob 0.785 Cluster 1 matrix A 30 19 1 25 24 30 32 12 14 14 20 1 Cluster 1 matrix C 6 4 9 9 8 0 3 3 0 1 2 9 Cluster 1 matrix G 3 8 22 5 4 6 5 22 27 28 20 31 Cluster 1 matrix T 4 12 11 4 7 7 3 6 2 0 1 2 Cluster 2 size 4 strength 113.022542841854 A 47 consensus AtAATgATTATc Cluster 2 member 31 ykuN-m1 ykuN align 2 A 8 AtAATGAtaaTC prob 1.000 Cluster 2 member 47 yqkL-m1 yqkL align 7 A 17 ATAATtATTATa prob 1.000 Cluster 2 member 66 dhbA-m1 dhbA align 4 A 14 ATAATcATTATC prob 1.000 Cluster 2 member 106 sigH-m1:b1 sigH align 0 A 8 AgAAacATTATA prob 0.982 Cluster 2 matrix A 44 7 43 42 7 8 43 2 4 35 0 16 Cluster 2 matrix C 0 3 2 1 2 12 1 0 0 7 0 27 Cluster 2 matrix G 1 8 2 0 0 17 1 2 2 1 0 1 Cluster 2 matrix T 2 29 0 4 38 10 2 43 41 4 47 3 Cluster 3 size 4 strength 94.8576794284213 A 17 consensus aAAAGCCtGgag Cluster 3 member 20 acoA-m2 acoA align 0 A 6 AAAaGcCtGgag prob 1.000 Cluster 3 member 28 motA-m1 motA align 17 A 2 aAaAGCCCGggg prob 0.993 Cluster 3 member 82 vpr-m1 vpr align 15 A 4 GAAAaCCgGcTG prob 1.000 Cluster 3 member 225 araA-m1:b2 araA align 1 A 5 AAAaGCcgGcca prob 1.000 Cluster 3 matrix A 11 17 15 12 2 4 1 2 0 2 5 3 Cluster 3 matrix C 0 0 1 1 0 13 13 3 0 5 5 1 Cluster 3 matrix G 5 0 1 2 14 0 1 5 16 6 2 9 Cluster 3 matrix T 1 0 0 2 1 0 2 7 1 4 5 4 Cluster 4 size 3 strength 82.5659161175299 A 34 consensus AaaaCGAAcAtT Cluster 4 member 235 ytiP-m2:b1 ytiP align 0 A 11 AtaAcGaAtAtT prob 1.000 Cluster 4 member 241 yumD-m1:b1 yumD align 6 A 9 aagacGAAcatt prob 1.000 Cluster 4 member 296 purA-m1:b1 purA align 0 A 14 aAaaCGAACatT prob 1.000 Cluster 4 matrix A 25 19 15 23 3 0 25 32 2 24 12 4 Cluster 4 matrix C 2 1 0 6 26 0 4 0 19 0 0 1 Cluster 4 matrix G 3 2 5 5 0 32 4 1 0 9 0 2 Cluster 4 matrix T 4 12 14 0 5 2 1 1 13 1 22 27 Cluster 5 size 3 strength 77.8072701589457 A 27 consensus AAtgTTCGtaTT Cluster 5 member 1 purR-m1 purR align 5 A 4 AATATTCGGgTT prob 1.000 Cluster 5 member 242 yumD-m1:b2 yumD align 1 A 9 AataTTCGtcTT prob 1.000 Cluster 5 member 297 purA-m1:b2 purA align 0 A 14 AatGTTCGtaTt prob 1.000 Cluster 5 matrix A 24 19 1 11 2 1 0 1 0 10 5 2 Cluster 5 matrix C 0 1 7 0 0 2 25 0 6 5 1 2 Cluster 5 matrix G 0 0 2 16 1 1 1 26 7 3 0 2 Cluster 5 matrix T 3 7 17 0 24 23 1 0 14 9 21 21 Cluster 6 size 3 strength 76.3265452186594 A 43 consensus GaAAgCGcTTtC Cluster 6 member 21 acoR-m1 acoR align 0 A 11 gaAaGCGCtTtc prob 0.999 Cluster 6 member 75 rbsR-m1 rbsR align 3 A 10 GtAAcCGgTTaC prob 1.000 Cluster 6 member 84 msmX-m1 msmX align 2 A 22 GaAAaCGtTTtC prob 1.000 Cluster 6 matrix A 2 23 38 38 16 2 0 1 1 4 13 7 Cluster 6 matrix C 3 5 1 0 8 41 0 18 3 0 2 32 Cluster 6 matrix G 31 2 0 4 18 0 41 7 0 0 5 2 Cluster 6 matrix T 7 13 4 1 1 0 2 17 39 39 23 2 Cluster 7 size 3 strength 66.3588779191676 A 34 consensus TcccggGAaTAT Cluster 7 member 17 yebB-m2 yebB align 10 A 12 TccCGggAaTAT prob 1.000 Cluster 7 member 18 purE-m1 purE align 7 A 16 TCccggGAaTAT prob 1.000 Cluster 7 member 123 lrpC-m1:b2 lrpC align 2 A 6 ccgaggGAatat prob 1.000 Cluster 7 matrix A 1 2 2 7 5 8 3 29 17 3 29 4 Cluster 7 matrix C 5 22 15 18 4 7 3 2 4 1 0 0 Cluster 7 matrix G 3 6 10 4 20 18 25 3 0 1 2 3 Cluster 7 matrix T 25 4 7 5 5 1 3 0 13 29 3 27 Cluster 8 size 3 strength 60.5868347576626 A 36 consensus agaaAGgaGGag Cluster 8 member 68 yunB-m1 yunB align 0 A 15 TgtaAGgaGGag prob 1.000 Cluster 8 member 237 dps-m1:b2 dps align 2 A 13 AgaaaaGaggAa prob 0.990 Cluster 8 member 262 mta-m1:b2 mta align 2 A 8 aaacAGGAGGaG prob 1.000 Cluster 8 matrix A 15 13 15 15 27 10 7 21 6 4 21 14 Cluster 8 matrix C 5 0 7 5 0 0 2 1 2 0 0 2 Cluster 8 matrix G 1 14 1 7 0 26 25 11 27 31 11 18 Cluster 8 matrix T 15 9 13 9 9 0 2 3 1 1 4 2 Cluster 9 size 2 strength 60.4297059340395 A 30 consensus CGTAATcATTAC Cluster 9 member 9 ycdH-m1 ycdH align 5 A 14 CGTAATcATTAC prob 1.000 Cluster 9 member 12 yciC-m1 yciC align 5 A 16 CGTAATcATTAC prob 1.000 Cluster 9 matrix A 3 5 3 27 28 0 4 27 0 2 23 0 Cluster 9 matrix C 26 0 1 0 0 3 11 0 1 0 5 25 Cluster 9 matrix G 0 25 3 0 2 1 10 2 1 0 0 0 Cluster 9 matrix T 1 0 23 3 0 26 5 1 28 28 2 5 Cluster 10 size 3 strength 60.2584262853272 A 16 consensus cGGactctCcgt Cluster 10 member 23 prkA-m1 prkA align 11 A 6 cGgcatggCcgt prob 1.000 Cluster 10 member 61 araA-m1 araA align 4 A 4 CGGGCtcacCGc prob 0.999 Cluster 10 member 77 ywoA-m1 ywoA align 11 A 6 cgGAaactCcga prob 1.000 Cluster 10 matrix A 1 1 2 8 6 6 0 1 0 3 2 4 Cluster 10 matrix C 10 0 0 4 7 0 7 3 12 11 3 4 Cluster 10 matrix G 3 14 14 4 3 1 7 5 3 2 11 1 Cluster 10 matrix T 2 1 0 0 0 9 2 7 1 0 0 7 Cluster 11 size 2 strength 60.1252952936522 A 26 consensus AAAAttaTTTTg Cluster 11 member 90 rocD-m1 rocD align 10 A 11 AAAAttaTTTTg prob 1.000 Cluster 11 member 91 rocR-m1 rocR align 10 A 15 AAAAttaTTTTg prob 1.000 Cluster 11 matrix A 25 22 24 19 6 8 11 3 0 0 0 0 Cluster 11 matrix C 0 2 0 0 0 2 8 0 0 2 2 0 Cluster 11 matrix G 1 2 0 2 4 2 0 0 0 0 0 16 Cluster 11 matrix T 0 0 2 5 16 14 7 23 26 24 24 10 Cluster 12 size 2 strength 58.6150487044922 A 50 consensus AACatatGTTCg Cluster 12 member 38 recA-m1 recA align 10 A 14 AAcAtaTgTTCG prob 1.000 Cluster 12 member 41 lexA-m1 lexA align 5 A 36 AACatatGTTcg prob 1.000 Cluster 12 matrix A 50 47 0 30 11 32 6 10 1 0 2 0 Cluster 12 matrix C 0 0 40 5 3 4 9 0 2 0 36 5 Cluster 12 matrix G 0 2 0 9 4 3 5 40 0 0 0 29 Cluster 12 matrix T 0 1 10 6 32 11 30 0 47 50 12 16 Cluster 13 size 3 strength 57.4933696780501 A 25 consensus cactCcTtcttT Cluster 13 member 183 yobO-m2:b1 yobO align 3 A 7 tACaCcTcCTcT prob 1.000 Cluster 13 member 199 spoIIM-m1:b1 spoIIM align 0 A 8 cttCCtTtCtaT prob 0.996 Cluster 13 member 278 katX-m1:b1 katX align 0 A 10 CccTCcTtTttT prob 0.994 Cluster 13 matrix A 5 12 1 4 1 5 0 2 1 2 6 0 Cluster 13 matrix C 14 7 15 9 21 9 2 10 15 3 8 1 Cluster 13 matrix G 1 0 3 0 1 6 0 0 1 4 0 0 Cluster 13 matrix T 5 6 6 12 2 5 23 13 8 16 11 24 Cluster 14 size 3 strength 56.7197676863107 A 19 consensus cTcCgagCgCag Cluster 14 member 49 spoIVB-m1 spoIVB align 6 A 9 cTacgAGCgcag prob 1.000 Cluster 14 member 65 ytgA-m2 ytgA align 4 A 2 CTGcggaacCAG prob 0.839 Cluster 14 member 70 clpP-m2 clpP align 21 A 8 cTcCGagCcCat prob 1.000 Cluster 14 matrix A 3 0 6 0 1 12 3 3 0 3 12 0 Cluster 14 matrix C 12 0 7 14 0 1 2 16 8 16 2 7 Cluster 14 matrix G 1 1 2 5 13 5 11 0 9 0 5 8 Cluster 14 matrix T 3 18 4 0 5 1 3 0 2 0 0 4 Cluster 15 size 3 strength 56.4141950020954 A 12 consensus CccagcATtTgT Cluster 15 member 10 ycdH-m2 ycdH align 11 A 2 accGGcATgagT prob 0.982 Cluster 15 member 146 yhaR-m1:b1 yhaR align 2 A 2 accgcaATGTAT prob 0.934 Cluster 15 member 177 spoVK-m1:b2 spoVK align 7 A 8 CtcagCATtTgT prob 1.000 Cluster 15 matrix A 2 1 0 5 0 1 10 0 1 1 4 0 Cluster 15 matrix C 10 4 6 0 1 8 0 0 0 2 1 1 Cluster 15 matrix G 0 4 4 4 7 3 1 2 5 0 6 0 Cluster 15 matrix T 0 3 2 3 4 0 1 10 6 9 1 11 Cluster 16 size 3 strength 56.3844045216415 A 13 consensus ggGtccctTTtT Cluster 16 member 62 araA-m2 araA align 5 A 4 agGgcCatTTaT prob 0.999 Cluster 16 member 205 yqhZ-m2:b2 yqhZ align 1 A 7 ggGcCcCTTTTT prob 1.000 Cluster 16 member 288 bglP-m2:b2 bglP align 1 A 2 caGgCCcCCcaT prob 0.986 Cluster 16 matrix A 4 2 0 0 3 0 3 0 0 0 3 1 Cluster 16 matrix C 4 2 2 4 9 8 9 5 2 1 1 0 Cluster 16 matrix G 5 6 11 4 1 3 1 1 0 0 2 2 Cluster 16 matrix T 0 3 0 5 0 2 0 7 11 12 7 10 Cluster 17 size 2 strength 55.7579666054274 A 20 consensus AAGATgGTCAAA Cluster 17 member 29 clpE-m1 clpE align 7 A 13 AAgaTgGTCAAA prob 1.000 Cluster 17 member 30 ykvI-m1 ykvI align 5 A 7 AAGATGGTCAAA prob 1.000 Cluster 17 matrix A 18 20 2 15 4 8 3 2 0 20 16 19 Cluster 17 matrix C 0 0 0 0 0 0 2 0 20 0 0 0 Cluster 17 matrix G 0 0 14 0 0 12 15 0 0 0 4 0 Cluster 17 matrix T 2 0 4 5 16 0 0 18 0 0 0 1 Cluster 18 size 3 strength 55.3781248310492 A 26 consensus tcttaGtattaa Cluster 18 member 59 lonB-m1 lonB align 3 A 9 cctTaGcgTtac prob 1.000 Cluster 18 member 255 cotH-m1:b1 cotH align 2 A 5 CCTcCacagtac prob 0.959 Cluster 18 member 280 yxjC-m1:b2 yxjC align 3 A 12 TtcaagtataaA prob 0.999 Cluster 18 matrix A 0 6 0 6 12 2 0 10 4 11 13 17 Cluster 18 matrix C 10 11 11 2 9 0 9 0 2 0 2 9 Cluster 18 matrix G 1 3 0 4 1 19 3 9 7 2 3 0 Cluster 18 matrix T 15 6 15 14 4 5 14 7 13 13 8 0 Cluster 19 size 3 strength 55.1862717679587 A 27 consensus GagaaatTaaAt Cluster 19 member 100 spoVT-m1:b1 spoVT align 3 A 12 gatcagtTaaAt prob 0.976 Cluster 19 member 137 glvA-m1:b2 glvA align 0 A 10 GagcaaTTtcgT prob 1.000 Cluster 19 member 201 spoIVB-m1:b1 spoIVB align 7 A 5 GagAaATTAaAt prob 0.998 Cluster 19 matrix A 0 11 8 12 16 12 6 0 11 10 19 6 Cluster 19 matrix C 6 6 2 11 3 5 0 1 2 7 2 4 Cluster 19 matrix G 20 1 12 1 3 6 4 0 5 8 5 0 Cluster 19 matrix T 1 9 5 3 5 4 17 26 9 2 1 17 Cluster 20 size 3 strength 54.559891772917 A 23 consensus ggGAaaAGgagG Cluster 20 member 2 spoVG-m1 spoVG align 0 A 9 gGgAAAAGgaGG prob 1.000 Cluster 20 member 190 ypjB-m1:b2 ypjB align 10 A 6 gggAcAaGaaga prob 0.996 Cluster 20 member 266 narK-m1:b2 narK align 0 A 8 gtGAaaAacctG prob 0.997 Cluster 20 matrix A 2 5 4 18 12 15 18 4 4 8 0 4 Cluster 20 matrix C 2 0 0 2 3 2 0 0 8 5 1 0 Cluster 20 matrix G 15 11 17 2 2 2 5 19 11 6 14 18 Cluster 20 matrix T 4 7 2 1 6 4 0 0 0 4 8 1 Cluster 21 size 3 strength 53.7960007959368 A 30 consensus ttTtcCTctTtt Cluster 21 member 157 cotX-m1:b1 cotX align 0 A 6 gaTTcctCaTTT prob 0.998 Cluster 21 member 230 yteI-m1:b1 yteI align 1 A 11 ttTctCtctTcA prob 0.992 Cluster 21 member 263 spo0F-m1:b1 spo0F align 0 A 13 ttTtaCTatttt prob 1.000 Cluster 21 matrix A 4 4 1 0 6 0 1 9 7 0 1 11 Cluster 21 matrix C 0 9 1 13 10 23 7 14 9 4 7 6 Cluster 21 matrix G 9 4 1 2 5 0 0 1 0 1 5 0 Cluster 21 matrix T 17 13 27 15 9 7 22 6 14 25 17 13 Cluster 22 size 3 strength 53.113603163949 A 24 consensus CgtcttttgaaT Cluster 22 member 0 yabG-m1 yabG align 6 A 4 CTTCcccaaCaT prob 0.998 Cluster 22 member 55 levD-m1 levD align 18 A 6 actTtgtTGtaT prob 0.933 Cluster 22 member 191 ypiB-m1:b1 ypiB align 4 A 14 CgtccttaaaaT prob 0.996 Cluster 22 matrix A 3 4 4 0 2 3 4 9 9 8 9 0 Cluster 22 matrix C 19 5 2 12 9 5 5 0 3 7 8 1 Cluster 22 matrix G 2 8 3 0 2 7 3 0 11 2 6 2 Cluster 22 matrix T 0 7 15 12 11 9 12 15 1 7 1 21 Cluster 23 size 3 strength 49.9315236667974 A 33 consensus gggttcacTtTT Cluster 23 member 122 lrpC-m1:b1 lrpC align 5 A 6 gaGaacTtTatT prob 0.968 Cluster 23 member 135 acoA-m1:b1 acoA align 1 A 21 ttgttcAcTtTT prob 0.999 Cluster 23 member 283 wapA-m1:b1 wapA align 5 A 6 aggaccaaTtTT prob 0.882 Cluster 23 matrix A 4 4 0 11 7 3 20 3 1 7 0 4 Cluster 23 matrix C 6 3 10 5 12 19 2 15 5 5 6 0 Cluster 23 matrix G 12 14 20 2 1 1 0 6 1 1 3 2 Cluster 23 matrix T 11 12 3 15 13 10 11 9 26 20 24 27 Cluster 24 size 2 strength 44.0939500640884 A 20 consensus GTtAGaTaatCT Cluster 24 member 76 nrgA-m1 nrgA align 4 A 12 GTtAGaTaAtCT prob 1.000 Cluster 24 member 178 glnR-m1:b1 glnR align 4 A 8 GTtAgataatcT prob 1.000 Cluster 24 matrix A 1 0 3 18 1 12 6 10 13 5 1 1 Cluster 24 matrix C 0 0 6 1 1 1 0 0 0 3 15 0 Cluster 24 matrix G 19 0 1 0 16 4 0 1 0 1 3 1 Cluster 24 matrix T 0 20 10 1 2 3 14 9 7 11 1 18 Cluster 25 size 2 strength 36.2283746298925 A 16 consensus AGaCaaatGtCT Cluster 25 member 19 acoA-m1 acoA align 7 A 6 AGACAcaTGTCT prob 1.000 Cluster 25 member 87 hutP-m1 hutP align 6 A 10 AGaCgattGcCT prob 1.000 Cluster 25 matrix A 15 0 9 0 7 6 5 3 0 2 2 0 Cluster 25 matrix C 1 0 1 15 1 3 3 3 0 4 14 1 Cluster 25 matrix G 0 12 3 0 5 4 3 0 16 1 0 2 Cluster 25 matrix T 0 4 3 1 3 3 5 10 0 9 0 13 Cluster 26 size 2 strength 34.8351870288347 A 18 consensus gaaaGaaagAAA Cluster 26 member 200 spoIIM-m1:b2 spoIIM align 6 A 8 GaaaGAaaGaAA prob 1.000 Cluster 26 member 233 ytxG-m1:b1 ytxG align 1 A 10 gtAaGaAagAAa prob 1.000 Cluster 26 matrix A 6 8 11 8 2 11 11 11 2 14 15 13 Cluster 26 matrix C 1 0 0 2 1 0 1 4 1 0 2 0 Cluster 26 matrix G 11 2 2 5 14 5 4 3 12 4 0 0 Cluster 26 matrix T 0 8 5 3 1 2 2 0 3 0 1 5 Cluster 27 size 2 strength 33.3301032344813 A 14 consensus AAaCACcCgctt Cluster 27 member 50 yqhZ-m1 yqhZ align 0 A 7 AaACACCCtCtt prob 1.000 Cluster 27 member 56 relA-m2 relA align 1 A 7 AAgCACccggta prob 1.000 Cluster 27 matrix A 12 11 8 2 13 1 0 0 2 2 3 2 Cluster 27 matrix C 0 0 0 12 0 11 9 10 1 7 3 1 Cluster 27 matrix G 2 3 4 0 0 1 0 0 6 5 0 5 Cluster 27 matrix T 0 0 2 0 1 1 5 4 5 0 8 6 Cluster 28 size 2 strength 30.9564577372 A 16 consensus TtttAtaAtAaa Cluster 28 member 227 ysdB-m1:b2 ysdB align 1 A 10 TtaTATaATAaa prob 1.000 Cluster 28 member 265 fnr-m1:b2 fnr align 2 A 6 TttcacgAaaaa prob 0.984 Cluster 28 matrix A 0 2 5 0 12 2 6 16 5 13 7 9 Cluster 28 matrix C 1 1 2 6 1 4 3 0 0 0 5 5 Cluster 28 matrix G 0 5 2 0 3 0 4 0 2 2 0 2 Cluster 28 matrix T 15 8 7 10 0 10 3 0 9 1 4 0 Cluster 29 size 2 strength 30.7501609264117 A 19 consensus TCagggaGgAag Cluster 29 member 46 spoIIAA-m1 spoIIAA align 9 A 6 TCaaggaGaAgG prob 1.000 Cluster 29 member 248 hag-m1:b2 hag align 0 A 13 tcaggGagtAag prob 1.000 Cluster 29 matrix A 3 3 12 3 2 4 11 1 5 16 9 1 Cluster 29 matrix C 0 14 3 5 4 1 2 1 2 1 0 4 Cluster 29 matrix G 1 2 4 10 11 13 3 15 6 1 9 11 Cluster 29 matrix T 15 0 0 1 2 1 3 2 6 1 1 3 Cluster 30 size 2 strength 30.3136464382465 A 15 consensus CctccTctTTcT Cluster 30 member 148 comK-m1:b1 comK align 6 A 3 caacgcctTTtT prob 0.852 Cluster 30 member 172 cotE-m1:b1 cotE align 0 A 12 CcTcCTttTTcT prob 1.000 Cluster 30 matrix A 1 4 2 0 0 1 2 5 3 0 1 1 Cluster 30 matrix C 13 6 0 8 10 1 6 0 0 0 7 1 Cluster 30 matrix G 0 1 3 1 5 1 1 2 0 0 1 0 Cluster 30 matrix T 1 4 10 6 0 12 6 8 12 15 6 13 Cluster 31 size 2 strength 30.0218144120938 A 36 consensus gaaagctttcTT Cluster 31 member 33 spoVD-m1 spoVD align 2 A 14 gcAgGCtTtcTT prob 1.000 Cluster 31 member 193 spoIVA-m2:b1 spoIVA align 2 A 22 gAaacgTttcTT prob 1.000 Cluster 31 matrix A 9 21 24 17 0 0 2 2 4 3 2 2 Cluster 31 matrix C 4 7 8 3 12 23 7 6 3 19 3 5 Cluster 31 matrix G 19 4 3 14 24 13 2 4 10 0 1 0 Cluster 31 matrix T 4 4 1 2 0 0 25 24 19 14 30 29 Cluster 32 size 2 strength 29.9751939707037 A 18 consensus AaGttTtTCAtT Cluster 32 member 34 spoIIGA-m1 spoIIGA align 4 A 6 AAGTcTgTcAaT prob 1.000 Cluster 32 member 142 lytE-m1:b1 lytE align 0 A 12 AcGgtTTTCAtt prob 1.000 Cluster 32 matrix A 17 10 1 0 3 0 1 2 2 14 6 0 Cluster 32 matrix C 0 6 2 3 6 0 1 1 13 0 2 4 Cluster 32 matrix G 1 0 14 5 1 2 5 0 0 4 1 0 Cluster 32 matrix T 0 2 1 10 8 16 11 15 3 0 9 14 Cluster 33 size 2 strength 29.9476403106691 A 18 consensus aAAAGGagatct Cluster 33 member 53 yqeZ-m1 yqeZ align 0 A 5 AAAAAGAgATCt prob 0.999 Cluster 33 member 121 ycsN-m1:b2 ycsN align 0 A 13 aAAaGgggtgct prob 1.000 Cluster 33 matrix A 11 18 18 13 5 3 8 0 8 1 2 1 Cluster 33 matrix C 1 0 0 0 0 1 2 5 2 0 11 1 Cluster 33 matrix G 6 0 0 4 13 13 8 11 0 6 1 6 Cluster 33 matrix T 0 0 0 1 0 1 0 2 8 11 4 10 Cluster 34 size 2 strength 29.7687953017443 A 16 consensus AtTtaCGGtaac Cluster 34 member 16 yebB-m1 yebB align 12 A 6 ATTTACGGTaGC prob 1.000 Cluster 34 member 186 xpt-m1:b1 xpt align 8 A 10 AaTtaCGGgaAt prob 0.997 Cluster 34 matrix A 14 5 0 1 10 0 0 0 1 8 7 1 Cluster 34 matrix C 0 0 0 4 0 14 0 0 2 1 2 8 Cluster 34 matrix G 1 0 0 0 5 1 15 15 4 6 7 0 Cluster 34 matrix T 1 11 16 11 1 1 1 1 9 1 0 7 Cluster 35 size 2 strength 29.2687687796069 A 19 consensus ttaaaaaGggta Cluster 35 member 139 prkA-m1:b2 prkA align 6 A 15 tgaaaaaGggta prob 0.999 Cluster 35 member 160 sspD-m1:b2 sspD align 8 A 4 cTcacaaGcaTa prob 0.993 Cluster 35 matrix A 5 1 8 8 8 11 11 0 0 6 0 10 Cluster 35 matrix C 3 0 4 6 7 3 3 2 5 3 1 0 Cluster 35 matrix G 0 8 2 2 0 1 5 16 11 8 6 9 Cluster 35 matrix T 11 10 5 3 4 4 0 1 3 2 12 0 Cluster 36 size 2 strength 28.771635179564 A 20 consensus Acatacaacgaa Cluster 36 member 108 ybaN-m1:b2 ybaN align 1 A 12 Acttacaacgta prob 0.999 Cluster 36 member 176 spoVK-m1:b1 spoVK align 3 A 8 AtAtaatacgaa prob 0.996 Cluster 36 matrix A 16 0 10 0 10 6 8 11 1 1 7 13 Cluster 36 matrix C 1 10 1 5 1 8 2 0 10 0 6 1 Cluster 36 matrix G 2 1 2 5 7 0 4 6 3 11 0 1 Cluster 36 matrix T 1 9 7 10 2 6 6 3 6 8 7 5 Cluster 37 size 2 strength 28.5319252097313 A 30 consensus tcttcCtTacaT Cluster 37 member 98 yabG-m1:b1 yabG align 2 A 12 tcctcCTctcat prob 1.000 Cluster 37 member 249 lytR-m1:b1 lytR align 0 A 18 TcttCctTacaT prob 0.998 Cluster 37 matrix A 4 1 2 7 1 5 1 2 14 7 15 1 Cluster 37 matrix C 2 18 11 7 20 21 9 7 5 13 8 4 Cluster 37 matrix G 4 5 2 0 1 4 0 0 1 2 1 0 Cluster 37 matrix T 20 6 15 16 8 0 20 21 10 8 6 25 Cluster 38 size 2 strength 28.5043487241807 A 17 consensus AgcgcgTccgCC Cluster 38 member 72 hag-m2 hag align 15 A 7 AaggcgtCcgcC prob 1.000 Cluster 38 member 188 cotD-m1:b2 cotD align 0 A 10 AgcgggTtcgCC prob 1.000 Cluster 38 matrix A 13 6 4 5 5 1 0 5 7 2 3 2 Cluster 38 matrix C 0 2 7 0 6 4 1 6 10 5 14 14 Cluster 38 matrix G 0 9 5 9 5 8 3 0 0 7 0 1 Cluster 38 matrix T 4 0 1 3 1 4 13 6 0 3 0 0 Cluster 39 size 2 strength 28.4681460321692 A 24 consensus AaAagtAtATGt Cluster 39 member 195 dacB-m1:b2 dacB align 2 A 7 AcAAGtataTGc prob 0.997 Cluster 39 member 220 spoVID-m1:b1 spoVID align 0 A 17 AaAagcAtATGT prob 0.999 Cluster 39 matrix A 21 10 19 16 6 2 20 3 17 3 1 1 Cluster 39 matrix C 2 10 3 0 3 7 0 8 2 1 0 6 Cluster 39 matrix G 0 2 1 2 14 6 3 3 3 1 19 2 Cluster 39 matrix T 1 2 1 6 1 9 1 10 2 19 4 15 Cluster 40 size 2 strength 28.366564531655 A 20 consensus gtTtTctcAAca Cluster 40 member 264 fnr-m1:b1 fnr align 7 A 6 tgttTcgtaaaA prob 0.961 Cluster 40 member 272 vpr-m1:b1 vpr align 6 A 14 gtTgTcacAAca prob 0.999 Cluster 40 matrix A 2 0 1 4 0 4 5 1 15 14 7 13 Cluster 40 matrix C 0 5 3 4 0 10 4 9 0 1 11 2 Cluster 40 matrix G 10 3 0 4 3 5 5 1 3 2 0 3 Cluster 40 matrix T 8 12 16 8 17 1 6 9 2 3 2 2 Cluster 41 size 2 strength 28.1841338618093 A 13 consensus ataaaAGGagGt Cluster 41 member 52 yqfC-m1 yqfC align 13 A 6 atgAaAGGgGGt prob 1.000 Cluster 41 member 292 dra-m1:b2 dra align 3 A 7 aTAggAGGAaGT prob 1.000 Cluster 41 matrix A 7 1 7 7 6 12 1 2 7 4 0 1 Cluster 41 matrix C 0 1 0 1 1 0 1 0 1 0 0 1 Cluster 41 matrix G 1 2 4 4 6 1 11 11 5 9 11 2 Cluster 41 matrix T 5 9 2 1 0 0 0 0 0 0 2 9 Cluster 42 size 2 strength 28.0750733559649 A 17 consensus TActtTataAtA Cluster 42 member 6 sigH-m1 sigH align 20 A 4 TaCTGTATAATA prob 0.954 Cluster 42 member 236 dps-m1:b1 dps align 5 A 13 TActtTatgatA prob 0.999 Cluster 42 matrix A 3 14 0 3 3 2 8 0 6 13 4 13 Cluster 42 matrix C 0 1 11 0 0 0 2 0 2 2 2 0 Cluster 42 matrix G 0 1 4 4 6 1 3 6 5 1 0 4 Cluster 42 matrix T 14 1 2 10 8 14 4 11 4 1 11 0 Cluster 43 size 2 strength 27.8294052533722 A 13 consensus ACaacgcAtATg Cluster 43 member 40 cwlC-m1 cwlC align 4 A 3 ACagccgATAtg prob 0.994 Cluster 43 member 58 spoIVFA-m1 spoIVFA align 2 A 10 ACaaaGCAtATg prob 0.998 Cluster 43 matrix A 11 0 8 7 3 2 0 13 4 12 0 3 Cluster 43 matrix C 1 13 1 2 4 2 9 0 0 0 1 1 Cluster 43 matrix G 0 0 0 2 4 7 2 0 0 1 1 8 Cluster 43 matrix T 1 0 4 2 2 2 2 0 9 0 11 1 Cluster 44 size 2 strength 27.2074072719738 A 8 consensus GccAtaCAcgcC Cluster 44 member 147 yhaR-m1:b2 yhaR align 0 A 2 CccATACATgca prob 0.969 Cluster 44 member 185 yocE-m1:b1 yocE align 0 A 6 GccAtaCAcatC prob 0.997 Cluster 44 matrix A 0 0 1 7 2 4 1 8 0 2 0 2 Cluster 44 matrix C 2 4 5 0 1 2 7 0 4 0 3 6 Cluster 44 matrix G 6 2 0 1 0 2 0 0 0 3 2 0 Cluster 44 matrix T 0 2 2 0 5 0 0 0 4 3 3 0 Cluster 45 size 2 strength 27.093602213222 A 16 consensus TgaAAagCtttt Cluster 45 member 118 yciC-m2:b1 yciC align 1 A 4 TtaAAtGCgGTa prob 0.941 Cluster 45 member 143 lytE-m1:b2 lytE align 0 A 12 TGaAaaaCtTtt prob 0.996 Cluster 45 matrix A 0 2 9 14 12 8 4 1 2 2 1 3 Cluster 45 matrix C 2 1 2 0 4 1 5 13 1 0 2 4 Cluster 45 matrix G 0 11 3 1 0 2 7 1 5 4 3 0 Cluster 45 matrix T 14 2 2 1 0 5 0 1 8 10 10 9 Cluster 46 size 2 strength 26.9540505639223 A 21 consensus TGgctcaaCTgg Cluster 46 member 5 spoIIE-m2 spoIIE align 4 A 8 TgGctcAACtGg prob 0.996 Cluster 46 member 24 sspB-m1 sspB align 0 A 13 tGgttcacCTcc prob 0.996 Cluster 46 matrix A 1 1 0 3 0 1 14 9 0 0 1 0 Cluster 46 matrix C 4 2 3 8 4 9 1 6 17 4 7 10 Cluster 46 matrix G 0 16 13 5 5 3 6 4 2 2 13 11 Cluster 46 matrix T 16 2 5 5 12 8 0 2 2 15 0 0 Cluster 47 size 2 strength 26.8639521102232 A 14 consensus tctTaAAAAaaA Cluster 47 member 184 yobO-m2:b2 yobO align 4 A 7 TCTTaAAAaaAA prob 0.993 Cluster 47 member 204 yqhZ-m2:b1 yqhZ align 0 A 7 ggaTaAAAAAGA prob 0.994 Cluster 47 matrix A 0 4 3 0 4 10 12 11 11 9 7 12 Cluster 47 matrix C 2 6 2 0 2 2 1 1 0 3 1 2 Cluster 47 matrix G 5 4 2 1 4 1 0 1 3 0 6 0 Cluster 47 matrix T 7 0 7 13 4 1 1 1 0 2 0 0 Cluster 48 size 2 strength 26.7685308289295 A 20 consensus gTTtgatagaAT Cluster 48 member 54 gpr-m1 gpr align 20 A 7 gTTTGaTAgAAT prob 0.994 Cluster 48 member 170 recA-m1:b1 recA align 2 A 13 tTTctattcaAT prob 0.995 Cluster 48 matrix A 3 3 0 0 4 9 5 11 2 9 17 0 Cluster 48 matrix C 2 0 1 6 3 1 1 0 7 4 0 0 Cluster 48 matrix G 8 1 1 3 7 3 3 3 8 5 1 4 Cluster 48 matrix T 7 16 18 11 6 7 11 6 3 2 2 16 Cluster 49 size 2 strength 26.7031349052371 A 18 consensus tCgaacgaTTct Cluster 49 member 85 yxjC-m1 yxjC align 17 A 5 tcGGcgctTTCC prob 0.994 Cluster 49 member 104 spoIIE-m2:b1 spoIIE align 5 A 13 tCgAacaaTTcT prob 0.995 Cluster 49 matrix A 5 2 3 10 10 2 5 9 0 0 4 0 Cluster 49 matrix C 1 15 4 0 7 9 5 0 0 0 9 7 Cluster 49 matrix G 0 0 11 8 1 4 6 2 0 1 0 1 Cluster 49 matrix T 12 1 0 0 0 3 2 7 18 17 5 10 Cluster 50 size 2 strength 26.4961776585497 A 17 consensus tAaaAaaaaCtC Cluster 50 member 209 yqfC-m1:b1 yqfC align 3 A 10 tAaaAaaaccTC prob 0.991 Cluster 50 member 243 yuxL-m1:b1 yuxL align 3 A 7 aaaAAaaatCcC prob 0.974 Cluster 50 matrix A 7 12 9 10 12 7 9 7 5 3 0 1 Cluster 50 matrix C 1 2 3 1 3 4 4 5 4 12 6 14 Cluster 50 matrix G 0 0 1 4 0 5 1 1 3 2 3 0 Cluster 50 matrix T 9 3 4 2 2 1 3 4 5 0 8 2 Cluster 51 size 2 strength 26.2645179305955 A 20 consensus TtgCttcaCtta Cluster 51 member 133 opuE-m1:b1 opuE align 2 A 7 TtaCTTaACtta prob 0.991 Cluster 51 member 221 lonB-m1:b1 lonB align 1 A 13 TagcttccCgca prob 0.992 Cluster 51 matrix A 2 7 4 0 4 2 8 9 2 5 2 9 Cluster 51 matrix C 1 2 2 16 2 3 10 7 15 5 4 4 Cluster 51 matrix G 1 1 9 1 1 3 2 0 3 4 6 7 Cluster 51 matrix T 16 10 5 3 13 12 0 4 0 6 8 0 Cluster 52 size 2 strength 26.1875356302232 A 21 consensus TTCatttgtAAt Cluster 52 member 175 cwlC-m1:b2 cwlC align 2 A 9 TTCataagaAAt prob 0.957 Cluster 52 member 279 yxjC-m1:b1 yxjC align 0 A 12 tcCatttgTAac prob 0.991 Cluster 52 matrix A 3 0 0 10 4 6 8 3 7 20 17 1 Cluster 52 matrix C 2 6 18 7 6 2 0 2 1 0 2 6 Cluster 52 matrix G 0 0 1 1 1 4 1 11 3 0 1 4 Cluster 52 matrix T 16 15 2 3 10 9 12 5 10 1 1 10 Cluster 53 size 2 strength 25.9403546439665 A 23 consensus cGaacagCtgcT Cluster 53 member 96 abrB-m2:b1 abrB align 3 A 2 cgTaaaaaaGCT prob 0.917 Cluster 53 member 216 relA-m1:b1 relA align 0 A 21 cGAacagCtgcT prob 0.981 Cluster 53 matrix A 2 2 15 12 7 8 7 1 3 6 0 1 Cluster 53 matrix C 13 1 2 7 9 3 1 17 6 2 11 0 Cluster 53 matrix G 0 17 0 1 0 6 11 5 1 11 9 1 Cluster 53 matrix T 8 3 6 3 7 6 4 0 13 4 3 21 Cluster 54 size 2 strength 25.2239650995459 A 28 consensus cacTcccTtctt Cluster 54 member 161 ykrQ-m1:b1 ykrQ align 0 A 17 cactcccTttgt prob 0.976 Cluster 54 member 217 spoVB-m1:b1 spoVB align 1 A 11 cCcTaCtTtCTt prob 0.975 Cluster 54 matrix A 6 13 5 1 4 7 2 0 3 0 4 0 Cluster 54 matrix C 13 11 16 3 13 18 15 1 6 17 0 10 Cluster 54 matrix G 0 3 6 3 3 0 1 0 2 0 8 3 Cluster 54 matrix T 9 1 1 21 8 3 10 27 17 11 16 15 Cluster 55 size 2 strength 25.1454130703336 A 15 consensus TgagaaTAccaA Cluster 55 member 128 ydcA-m1:b1 ydcA align 1 A 10 TgatAaTAccaA prob 0.961 Cluster 55 member 163 ykuM-m1:b2 ykuM align 0 A 5 tatGcATAgcaa prob 0.875 Cluster 55 matrix A 1 4 7 0 10 9 1 14 3 2 6 11 Cluster 55 matrix C 2 1 0 2 3 4 1 0 5 6 2 1 Cluster 55 matrix G 0 6 3 7 1 1 1 0 3 5 4 2 Cluster 55 matrix T 12 4 5 6 1 1 12 1 4 2 3 1 Cluster 56 size 2 strength 25.0273616009276 A 12 consensus acggtTaTgcGg Cluster 56 member 13 yclF-m2 yclF align 11 A 6 cacgttcTGcGt prob 1.000 Cluster 56 member 25 argC-m1 argC align 14 A 6 acGttTatacGG prob 0.976 Cluster 56 matrix A 5 4 1 0 4 0 5 3 3 2 0 0 Cluster 56 matrix C 2 5 3 0 0 0 2 0 1 8 0 1 Cluster 56 matrix G 2 0 5 6 1 3 2 0 8 0 10 7 Cluster 56 matrix T 3 3 3 6 7 9 3 9 0 2 2 4 Cluster 57 size 2 strength 24.9783601422911 A 16 consensus TgttCttcaatg Cluster 57 member 276 dltA-m2:b1 dltA align 0 A 9 TgtgcctccAtg prob 0.970 Cluster 57 member 291 dra-m1:b1 dra align 0 A 7 TGTTCtatagTt prob 0.970 Cluster 57 matrix A 0 2 1 0 1 2 4 3 6 9 3 1 Cluster 57 matrix C 0 2 4 1 12 3 0 5 4 2 0 1 Cluster 57 matrix G 1 11 2 6 1 4 4 3 3 4 4 8 Cluster 57 matrix T 15 1 9 9 2 7 8 5 3 1 9 6 Cluster 58 size 2 strength 24.9339443153186 A 17 consensus TtTtttcattcG Cluster 58 member 92 bofA-m1:b1 bofA align 1 A 8 TcTTaTCttTcG prob 0.967 Cluster 58 member 150 yisK-m1:b1 yisK align 1 A 9 TTtttgcatacG prob 0.865 Cluster 58 matrix A 1 0 1 2 6 1 2 8 4 5 4 0 Cluster 58 matrix C 0 6 1 3 2 1 11 2 4 1 9 0 Cluster 58 matrix G 1 1 3 1 0 5 1 2 0 2 2 13 Cluster 58 matrix T 15 10 12 11 9 10 3 5 9 9 2 4 Cluster 59 size 2 strength 24.435816379698 A 17 consensus agGAGGagagag Cluster 59 member 99 yabG-m1:b2 yabG align 0 A 12 atgaGGagtaag prob 0.973 Cluster 59 member 202 spoIVB-m1:b2 spoIVB align 11 A 5 aGGAGagaaGAG prob 0.994 Cluster 59 matrix A 11 0 3 12 0 3 6 4 7 7 9 2 Cluster 59 matrix C 1 1 0 0 0 2 2 2 1 1 3 2 Cluster 59 matrix G 5 9 12 0 16 12 5 10 3 9 5 10 Cluster 59 matrix T 0 7 2 5 1 0 4 1 6 0 0 3 Cluster 60 size 2 strength 24.3593049083889 A 27 consensus AgaAaatagtcA Cluster 60 member 156 yjbF-m1:b2 yjbF align 2 A 15 AaaAaaaaatcA prob 0.946 Cluster 60 member 182 citB-m1:b2 citB align 1 A 12 AgAAacTagTca prob 0.946 Cluster 60 matrix A 24 7 17 21 15 9 9 11 10 1 7 19 Cluster 60 matrix C 2 4 3 0 3 7 1 1 5 4 14 2 Cluster 60 matrix G 0 12 7 6 5 4 1 5 11 4 6 3 Cluster 60 matrix T 1 4 0 0 4 7 16 10 1 18 0 3 Cluster 61 size 2 strength 24.0279035716983 A 18 consensus ggtgcaAatgca Cluster 61 member 109 sigW-m1:b1 sigW align 8 A 7 aaggCAAatGga prob 0.925 Cluster 61 member 145 sspB-m1:b2 sspB align 2 A 11 GGtgcaAAacca prob 0.926 Cluster 61 matrix A 6 3 2 3 2 12 17 11 5 0 6 8 Cluster 61 matrix C 1 4 3 1 11 3 0 6 1 7 9 4 Cluster 61 matrix G 11 11 3 10 2 2 1 1 4 8 3 5 Cluster 61 matrix T 0 0 10 4 3 1 0 0 8 3 0 1 Cluster 62 size 2 strength 23.5620114146116 A 21 consensus tAttgtAgAgac Cluster 62 member 80 spoIID-m2 spoIID align 14 A 4 TaaaGTAGAGaC prob 0.870 Cluster 62 member 117 yciC-m1:b2 yciC align 0 A 17 tAttgtAgAgaa prob 0.854 Cluster 62 matrix A 9 15 8 3 6 6 18 5 16 2 10 8 Cluster 62 matrix C 0 2 0 3 1 1 0 1 0 3 0 10 Cluster 62 matrix G 0 2 3 4 10 3 0 12 4 11 6 1 Cluster 62 matrix T 12 2 10 11 4 11 3 3 1 5 5 2 Cluster 63 size 2 strength 23.5448292797868 A 24 consensus TTtctctccTtT Cluster 63 member 15 ydcC-m1 ydcC align 10 A 9 TTtgtctcaTaT prob 0.815 Cluster 63 member 48 spo0A-m1 spo0A align 3 A 15 TtTctttgtTtt prob 0.885 Cluster 63 matrix A 0 3 2 6 4 0 1 0 6 1 8 4 Cluster 63 matrix C 2 2 3 12 4 12 5 10 8 0 1 0 Cluster 63 matrix G 0 2 3 4 3 0 3 8 2 0 2 3 Cluster 63 matrix T 22 17 16 2 13 12 15 6 8 23 13 17 Cluster 64 size 2 strength 22.2119560173032 A 10 consensus acCCtcccGGtg Cluster 64 member 14 lrpC-m1 lrpC align 0 A 4 GCCCtCCaGGaG prob 0.995 Cluster 64 member 213 spoIVCA-m1:b1 spoIVCA align 0 A 6 aacCttgcGgtc prob 0.999 Cluster 64 matrix A 4 2 1 1 2 2 2 2 0 0 3 0 Cluster 64 matrix C 3 4 7 9 1 5 4 3 0 1 1 3 Cluster 64 matrix G 3 1 2 0 1 0 2 3 9 8 1 5 Cluster 64 matrix T 0 3 0 0 6 3 2 2 1 1 5 2