Old: Best Clustering has 83 out of 153 motifs in 34 clusters. Numgenes = 142 Logposterior = -34926.8108114797 alpha = 1 iter = 476 Now: 30 clusters containing 74 motifs Cluster 1 size 4 strength 202.570039521803 A 58 consensus CGAAcatT--AatgTTCG Cluster 1 member 25 purE-m1 purE align 3-1 A 24 CGAACaTT--AAtGTTCG prob 1.000 Cluster 1 member 112 ytiP-m2 ytiP align 4-0 A 11 cGaAtAtT--AaTATTCG prob 1.000 Cluster 1 member 116 yumD-m1 yumD align 10-1 A 9 cGAAcatt--AataTTCG prob 1.000 Cluster 1 member 152 purA-m1 purA align 4-0 A 14 CGAACatT--AatGTTCG prob 1.000 Cluster 1 matrix1 A 5 0 43 53 4 38 16 5 Cluster 1 matrix1 C 45 0 4 0 38 0 1 3 Cluster 1 matrix1 G 2 54 7 2 0 19 1 4 Cluster 1 matrix1 T 6 4 4 3 16 1 40 46 Cluster 1 matrix2 A 51 39 1 19 6 8 1 3 Cluster 1 matrix2 C 2 2 18 0 2 5 55 1 Cluster 1 matrix2 G 2 1 3 37 1 1 1 50 Cluster 1 matrix2 T 3 16 36 2 49 44 1 4 Cluster 2 size 5 strength 158.170867420725 A 46 consensus ttataata--aAaAGGgg Cluster 2 member 17 ycsN-m1 ycsN align 6-0 A 13 tTttaaaA--aAAaGggg prob 1.000 Cluster 2 member 19 ydaP-m1 ydaP align 3-6 A 6 aaaTccTa--cAaaGGAG prob 1.000 Cluster 2 member 21 ydcA-m1 ydcA align 1-4 A 10 TgatAaTA--AAaAgggG prob 1.000 Cluster 2 member 89 yqfC-m1 yqfC align 0-5 A 10 TgAtAaaA--aAaAGGGa prob 1.000 Cluster 2 member 117 yuxL-m1 yuxL align 3-2 A 7 aaaAAaaa--TAAAGGag prob 0.998 Cluster 2 matrix1 A 10 14 25 15 29 24 15 32 Cluster 2 matrix1 C 5 5 0 4 8 11 6 9 Cluster 2 matrix1 G 3 10 6 4 0 7 5 1 Cluster 2 matrix1 T 28 17 15 23 9 4 20 4 Cluster 2 matrix2 A 22 45 32 33 4 9 17 7 Cluster 2 matrix2 C 7 0 1 5 3 2 3 4 Cluster 2 matrix2 G 11 1 6 8 37 34 26 29 Cluster 2 matrix2 T 6 0 7 0 2 1 0 6 Cluster 3 size 4 strength 117.945739958341 A 26 consensus tcAtgTcA--tcTtAcaT Cluster 3 member 3 abrB-m2 abrB align 0-9 A 2 GaAcgTaa--cgagAaaT prob 1.000 Cluster 3 member 36 yhaR-m1 yhaR align 6-1 A 2 caATGTAT--ccATACAT prob 1.000 Cluster 3 member 61 glnR-m1 glnR align 0-0 A 8 tcATGTtA--tcTaACAT prob 1.000 Cluster 3 member 106 ackA-m1 ackA align 7-0 A 14 TcAatTcA--gcTtAaaT prob 1.000 Cluster 3 matrix1 A 0 6 26 6 0 3 7 22 Cluster 3 matrix1 C 7 12 0 8 0 1 9 0 Cluster 3 matrix1 G 4 4 0 0 16 0 4 1 Cluster 3 matrix1 T 15 4 0 12 10 22 6 3 Cluster 3 matrix2 A 1 2 5 5 24 8 17 2 Cluster 3 matrix2 C 6 14 0 3 0 16 0 0 Cluster 3 matrix2 G 9 1 0 7 0 2 8 1 Cluster 3 matrix2 T 10 9 21 11 2 0 1 23 Cluster 4 size 3 strength 98.4355680663491 A 46 consensus AATgATTA--Attataaa Cluster 4 member 12 ycdH-m1 ycdH align 3-1 A 13 AATgATTa--ATaattat prob 1.000 Cluster 4 member 15 yciC-m1 yciC align 7-1 A 17 AATgATTA--AttgtAgA prob 1.000 Cluster 4 member 115 dhbA-m1 dhbA align 4-0 A 16 AATcATTA--AataaaAt prob 1.000 Cluster 4 matrix1 A 41 41 2 7 41 2 3 35 Cluster 4 matrix1 C 0 4 2 17 2 3 3 5 Cluster 4 matrix1 G 2 1 2 18 2 1 0 3 Cluster 4 matrix1 T 3 0 40 4 1 40 40 3 Cluster 4 matrix2 A 37 13 11 19 15 23 23 18 Cluster 4 matrix2 C 2 4 3 2 6 2 4 6 Cluster 4 matrix2 G 3 3 7 15 3 3 12 7 Cluster 4 matrix2 T 4 26 25 10 22 18 7 15 Cluster 5 size 3 strength 92.9224166442543 A 17 consensus AtTtaCGG--CCGcaAtT Cluster 5 member 23 yebB-m1 yebB align 4-13 A 5 ATTTACGG--CCGaaATT prob 1.000 Cluster 5 member 70 xpt-m1 xpt align 8-10 A 10 AaTtaCGG--CCGcaAaT prob 1.000 Cluster 5 member 139 dltA-m1 dltA align 8-2 A 2 aaTacaGG--CCgcgAag prob 0.999 Cluster 5 matrix1 A 14 6 0 2 10 1 0 0 Cluster 5 matrix1 C 1 0 0 5 1 15 0 0 Cluster 5 matrix1 G 1 0 0 0 6 0 16 16 Cluster 5 matrix1 T 1 11 17 10 0 1 1 1 Cluster 5 matrix2 A 1 1 1 2 7 16 6 0 Cluster 5 matrix2 C 16 15 0 8 1 1 0 1 Cluster 5 matrix2 G 0 0 14 1 6 0 0 1 Cluster 5 matrix2 T 0 1 2 6 3 0 11 15 Cluster 6 size 3 strength 79.8322640749817 A 31 consensus TttctCtT--AtaagaGA Cluster 6 member 22 ydcC-m1 ydcC align 2-1 A 14 tgcacCTT--ATAtgaga prob 0.996 Cluster 6 member 44 cotX-m1 cotX align 2-5 A 6 TTcctCaT--AaggAaGA prob 1.000 Cluster 6 member 107 yteI-m1 yteI align 3-6 A 11 TctCtctT--AagaGAgA prob 1.000 Cluster 6 matrix1 A 2 0 2 6 0 7 9 0 Cluster 6 matrix1 C 3 11 13 15 13 22 5 3 Cluster 6 matrix1 G 3 7 1 3 1 0 1 1 Cluster 6 matrix1 T 23 13 15 7 17 2 16 27 Cluster 6 matrix2 A 29 11 12 12 10 18 8 23 Cluster 6 matrix2 C 1 0 1 0 0 2 1 1 Cluster 6 matrix2 G 1 2 12 8 18 3 22 1 Cluster 6 matrix2 T 0 18 6 11 3 8 0 6 Cluster 7 size 3 strength 78.4036454238324 A 25 consensus cccctcCt--GgaggagA Cluster 7 member 72 ypjB-m1 ypjB align 2-16 A 6 TCtaccCt--aGaagaga prob 1.000 Cluster 7 member 80 spoIIM-m1 spoIIM align 2-10 A 8 tCCtTtCt--GAaaGaAA prob 0.989 Cluster 7 member 90 spoIIP-m1 spoIIP align 4-2 A 11 CcactcCT--GgagtgGA prob 1.000 Cluster 7 matrix1 A 0 2 4 6 1 2 0 2 Cluster 7 matrix1 C 13 17 13 9 9 11 24 3 Cluster 7 matrix1 G 1 1 1 5 0 2 0 3 Cluster 7 matrix1 T 11 5 7 5 15 10 1 17 Cluster 7 matrix2 A 3 9 14 9 3 11 10 20 Cluster 7 matrix2 C 0 3 0 5 0 0 0 3 Cluster 7 matrix2 G 20 13 9 10 14 11 14 0 Cluster 7 matrix2 T 2 0 2 1 8 3 1 2 Cluster 8 size 3 strength 74.6141919563252 A 19 consensus CcTtctcT--TagttaAA Cluster 8 member 67 yobO-m2 yobO align 7-4 A 7 CcTcCTcT--TCTTaAAA prob 1.000 Cluster 8 member 134 narK-m2 narK align 9-1 A 2 cTTTcaaT--cAgccAAA prob 0.995 Cluster 8 member 141 katX-m1 katX align 4-0 A 10 CcTtTttT--TacctcAA prob 0.997 Cluster 8 matrix1 A 1 4 0 1 1 2 3 0 Cluster 8 matrix1 C 15 7 0 7 8 3 8 0 Cluster 8 matrix1 G 2 4 0 0 2 3 0 0 Cluster 8 matrix1 T 1 4 19 11 8 11 8 19 Cluster 8 matrix2 A 0 8 0 2 5 10 15 16 Cluster 8 matrix2 C 1 6 5 5 4 5 3 0 Cluster 8 matrix2 G 1 3 7 0 4 4 0 2 Cluster 8 matrix2 T 17 2 7 12 6 0 1 1 Cluster 9 size 3 strength 73.532224559071 A 19 consensus caaacAca--cattTGTC Cluster 9 member 60 spoVK-m1 spoVK align 0-12 A 8 TcAAtAta--CATtTgTC prob 0.999 Cluster 9 member 68 yocE-m1 yocE align 2-2 A 6 cAtaCAca--cagTTGtC prob 1.000 Cluster 9 member 125 cotH-m1 cotH align 2-0 A 5 CCTcCaca--caCgTgTc prob 1.000 Cluster 9 matrix1 A 1 8 8 10 2 15 0 10 Cluster 9 matrix1 C 10 8 2 5 12 0 10 0 Cluster 9 matrix1 G 0 2 1 2 1 2 1 5 Cluster 9 matrix1 T 8 1 8 2 4 2 8 4 Cluster 9 matrix2 A 1 12 2 2 0 2 0 2 Cluster 9 matrix2 C 12 0 5 1 3 2 1 14 Cluster 9 matrix2 G 2 5 4 4 0 14 2 0 Cluster 9 matrix2 T 4 2 8 12 16 1 16 3 Cluster 10 size 3 strength 71.051171180799 A 30 consensus tcCgcctt--gAaGGgGg Cluster 10 member 13 yceC-m1 yceC align 1-0 A 6 tcCgCttc--GAagcgga prob 0.999 Cluster 10 member 73 ypiB-m1 ypiB align 2-8 A 14 tcCgtcct--aAggGggg prob 1.000 Cluster 10 member 118 yunB-m1 yunB align 0-5 A 10 cCCtCCTT--gaAGGaGG prob 1.000 Cluster 10 matrix1 A 2 1 0 7 2 0 2 4 Cluster 10 matrix1 C 8 20 28 6 17 18 9 8 Cluster 10 matrix1 G 6 5 2 11 1 1 1 3 Cluster 10 matrix1 T 14 4 0 6 10 11 18 15 Cluster 10 matrix2 A 12 23 14 8 4 10 1 10 Cluster 10 matrix2 C 0 0 2 0 3 1 8 1 Cluster 10 matrix2 G 15 6 8 22 22 16 21 19 Cluster 10 matrix2 T 3 1 6 0 1 3 0 0 Cluster 11 size 2 strength 41.9325095450178 A 20 consensus CTctcAcg--AgGAGGaG Cluster 11 member 4 yabG-m1 yabG align 7-0 A 12 CTctcatg--atgaGGag prob 1.000 Cluster 11 member 128 mta-m1 mta align 5-6 A 8 CTcTaACG--AGGAGGaG prob 1.000 Cluster 11 matrix1 A 1 0 4 5 6 14 0 3 Cluster 11 matrix1 C 19 3 9 2 8 2 12 2 Cluster 11 matrix1 G 0 0 0 0 0 1 0 12 Cluster 11 matrix1 T 0 17 7 13 6 3 8 3 Cluster 11 matrix2 A 14 1 4 14 2 2 9 3 Cluster 11 matrix2 C 1 1 0 0 0 0 2 2 Cluster 11 matrix2 G 3 11 14 1 18 18 5 14 Cluster 11 matrix2 T 2 7 2 5 0 0 4 1 Cluster 12 size 2 strength 41.2929915916255 A 23 consensus ccttcTTT--gTaTtata Cluster 12 member 34 yhdM-m1 yhdM align 2-1 A 20 CcttcTTT--gTaTtata prob 1.000 Cluster 12 member 37 comK-m1 comK align 11-1 A 3 cctTTtTg--gcattaaa prob 1.000 Cluster 12 matrix1 A 0 0 9 6 2 3 2 0 Cluster 12 matrix1 C 15 15 0 1 12 2 2 1 Cluster 12 matrix1 G 6 0 3 0 0 1 0 3 Cluster 12 matrix1 T 2 8 11 16 9 17 19 19 Cluster 12 matrix2 A 1 0 12 0 6 12 8 14 Cluster 12 matrix2 C 2 4 1 4 0 0 1 7 Cluster 12 matrix2 G 15 0 10 1 3 4 5 2 Cluster 12 matrix2 T 5 19 0 18 14 7 9 0 Cluster 13 size 2 strength 41.1495268130205 A 21 consensus caCgtTtt--GtCtagAc Cluster 13 member 111 ytiP-m1 ytiP align 0-0 A 6 ccCgtaTa--GcctAaac prob 1.000 Cluster 13 member 130 spoIIR-m1 spoIIR align 1-0 A 15 caCgtTtc--GtCtagAc prob 1.000 Cluster 13 matrix1 A 1 11 0 1 1 3 1 6 Cluster 13 matrix1 C 12 8 17 6 6 1 7 7 Cluster 13 matrix1 G 6 0 4 12 3 0 0 0 Cluster 13 matrix1 T 2 2 0 2 11 17 13 8 Cluster 13 matrix2 A 0 1 2 3 11 5 15 6 Cluster 13 matrix2 C 0 7 15 3 4 1 1 11 Cluster 13 matrix2 G 21 4 2 2 6 8 5 4 Cluster 13 matrix2 T 0 9 2 13 0 7 0 0 Cluster 14 size 2 strength 40.9895493076527 A 35 consensus TTtcacAa--GcAaAAaa Cluster 14 member 43 yjbF-m1 yjbF align 3-0 A 15 TTctagAg--GcAaaAaa prob 1.000 Cluster 14 member 151 rocR-m1 rocR align 0-0 A 20 TTTcacAa--GcAAAAta prob 1.000 Cluster 14 matrix1 A 2 1 3 3 15 4 27 13 Cluster 14 matrix1 C 0 2 6 15 4 15 3 5 Cluster 14 matrix1 G 2 2 5 2 5 11 1 8 Cluster 14 matrix1 T 31 30 21 15 11 5 4 9 Cluster 14 matrix2 A 6 7 32 22 28 29 13 16 Cluster 14 matrix2 C 0 18 3 1 1 1 2 5 Cluster 14 matrix2 G 27 6 0 10 6 4 9 2 Cluster 14 matrix2 T 2 4 0 2 0 1 11 12 Cluster 15 size 2 strength 40.8341977742922 A 28 consensus cTttttTc--AttaTtct Cluster 15 member 94 yrvJ-m1 yrvJ align 1-2 A 15 cTtctcTc--ATtaTtct prob 1.000 Cluster 15 member 131 spo0F-m1 spo0F align 5-1 A 13 CTattttc--Attgtact prob 1.000 Cluster 15 matrix1 A 1 1 7 1 0 0 3 0 Cluster 15 matrix1 C 18 2 8 12 10 8 5 17 Cluster 15 matrix1 G 7 0 2 0 0 4 0 2 Cluster 15 matrix1 T 2 25 11 15 18 16 20 9 Cluster 15 matrix2 A 23 1 6 10 0 10 1 1 Cluster 15 matrix2 C 1 5 1 9 0 5 13 2 Cluster 15 matrix2 G 1 3 2 7 8 1 6 8 Cluster 15 matrix2 T 3 19 19 2 20 12 8 17 Cluster 16 size 2 strength 39.9312420516804 A 20 consensus tCagGccT--tGaagagc Cluster 16 member 108 yttP-m1 yttP align 1-0 A 12 gCagGccT--tGaagagc prob 1.000 Cluster 16 member 133 narK-m1 narK align 3-1 A 8 TCgagCcT--tGAaaAac prob 1.000 Cluster 16 matrix1 A 1 0 9 4 3 2 3 0 Cluster 16 matrix1 C 0 17 5 4 3 11 12 1 Cluster 16 matrix1 G 9 1 5 6 14 4 1 4 Cluster 16 matrix1 T 10 2 1 6 0 3 4 15 Cluster 16 matrix2 A 2 3 13 9 5 13 5 0 Cluster 16 matrix2 C 0 0 2 2 4 0 1 13 Cluster 16 matrix2 G 5 17 0 1 8 7 12 7 Cluster 16 matrix2 T 13 0 5 8 3 0 2 0 Cluster 17 size 2 strength 39.892281984082 A 25 consensus TtttgaCA--agtAtatg Cluster 17 member 88 yqfZ-m1 yqfZ align 2-0 A 11 TctTgACA--AGcAtAtg prob 1.000 Cluster 17 member 97 spoIVFA-m1 spoIVFA align 1-3 A 14 TtTgtaCa--ggtATatG prob 1.000 Cluster 17 matrix1 A 1 3 5 0 3 17 1 18 Cluster 17 matrix1 C 1 9 3 0 1 1 24 3 Cluster 17 matrix1 G 0 2 0 10 11 4 0 2 Cluster 17 matrix1 T 23 11 17 15 10 3 0 2 Cluster 17 matrix2 A 14 7 6 20 7 17 3 3 Cluster 17 matrix2 C 0 1 9 3 0 0 4 0 Cluster 17 matrix2 G 8 16 0 2 2 2 3 17 Cluster 17 matrix2 T 3 1 10 0 16 6 15 5 Cluster 18 size 2 strength 39.5880769918917 A 22 consensus Atattttt--aaAGgata Cluster 18 member 30 prkA-m1 prkA align 11-10 A 15 Acattttt--aaaGggta prob 1.000 Cluster 18 member 76 dacB-m1 dacB align 9-3 A 7 ataCTTgT--cAAGtata prob 1.000 Cluster 18 matrix1 A 16 2 11 1 1 1 2 1 Cluster 18 matrix1 C 1 8 7 10 4 1 4 1 Cluster 18 matrix1 G 3 3 2 0 2 5 5 5 Cluster 18 matrix1 T 2 9 2 11 15 15 11 15 Cluster 18 matrix2 A 10 15 16 1 0 8 0 12 Cluster 18 matrix2 C 9 2 2 2 3 3 3 0 Cluster 18 matrix2 G 1 1 4 18 12 8 7 10 Cluster 18 matrix2 T 2 4 0 1 7 3 12 0 Cluster 19 size 2 strength 37.2195503799542 A 16 consensus GgcAacTc--TtcaAgTC Cluster 19 member 11 sigW-m1 sigW align 10-9 A 7 ggCAAatG--TTcaAgTC prob 1.000 Cluster 19 member 55 ftsA-m1 ftsA align 5-4 A 9 GgcACcTC--TtcaatTc prob 1.000 Cluster 19 matrix1 A 1 0 1 15 8 5 1 1 Cluster 19 matrix1 C 0 2 11 0 7 8 2 8 Cluster 19 matrix1 G 12 10 0 1 1 2 1 5 Cluster 19 matrix1 T 3 4 4 0 0 1 12 2 Cluster 19 matrix2 A 1 5 3 6 13 2 0 2 Cluster 19 matrix2 C 0 1 7 2 0 1 0 13 Cluster 19 matrix2 G 1 0 2 5 0 7 1 1 Cluster 19 matrix2 T 14 10 4 3 3 6 15 0 Cluster 20 size 2 strength 36.8768316167419 A 9 consensus AatcCgGt--gCaGcggg Cluster 20 member 16 yciC-m2 yciC align 4-7 A 4 AAtGCgGT--GCAGCgaG prob 1.000 Cluster 20 member 127 ywoA-m1 ywoA align 5-1 A 5 AaTcCgGa--gCaGaGta prob 1.000 Cluster 20 matrix1 A 8 6 2 1 0 1 0 3 Cluster 20 matrix1 C 0 1 1 4 7 0 1 1 Cluster 20 matrix1 G 1 0 0 3 1 4 7 0 Cluster 20 matrix1 T 0 2 6 1 1 4 1 5 Cluster 20 matrix2 A 2 1 6 1 4 2 2 2 Cluster 20 matrix2 C 1 8 1 1 5 1 1 2 Cluster 20 matrix2 G 6 0 2 7 0 6 3 4 Cluster 20 matrix2 T 0 0 0 0 0 0 3 1 Cluster 21 size 2 strength 36.8478076179407 A 16 consensus tctatTTT--gtTtcctt Cluster 21 member 20 ydaR-m1 ydaR align 2-0 A 10 TgtatTTT--GTTTaCtt prob 1.000 Cluster 21 member 145 wapA-m1 wapA align 9-7 A 6 ccaaTtTT--tattCtTt prob 1.000 Cluster 21 matrix1 A 1 1 6 6 2 0 0 2 Cluster 21 matrix1 C 4 6 3 1 0 3 2 0 Cluster 21 matrix1 G 0 6 0 6 3 0 2 1 Cluster 21 matrix1 T 11 3 7 3 11 13 12 13 Cluster 21 matrix2 A 0 3 2 3 6 0 1 2 Cluster 21 matrix2 C 0 1 1 0 10 9 1 1 Cluster 21 matrix2 G 10 1 0 2 0 0 4 5 Cluster 21 matrix2 T 6 11 13 11 0 7 10 8 Cluster 22 size 2 strength 36.1707394275147 A 16 consensus gTgaAacc--TaAtAaaA Cluster 22 member 103 ysdB-m1 ysdB align 0-6 A 10 GTGAAacC--TaATAaaA prob 0.999 Cluster 22 member 132 fnr-m1 fnr align 13-2 A 6 gtaaaAcG--TttcacgA prob 0.999 Cluster 22 matrix1 A 1 0 5 11 12 11 1 1 Cluster 22 matrix1 C 2 3 0 0 3 2 10 7 Cluster 22 matrix1 G 11 1 10 0 0 3 3 5 Cluster 22 matrix1 T 2 12 1 5 1 0 2 3 Cluster 22 matrix2 A 0 6 12 1 13 6 6 15 Cluster 22 matrix2 C 2 2 0 3 0 5 4 0 Cluster 22 matrix2 G 0 3 0 1 3 0 5 0 Cluster 22 matrix2 T 14 5 4 11 0 5 1 1 Cluster 23 size 2 strength 35.9212451736375 A 13 consensus TGaTcaat--taACaaGc Cluster 23 member 40 med-m1 med align 0-2 A 11 TGaTctAt--caACAaGc prob 0.999 Cluster 23 member 147 bglP-m2 bglP align 2-12 A 2 TggTgAaa--TaAaaAGc prob 0.893 Cluster 23 matrix1 A 0 0 5 0 2 6 9 1 Cluster 23 matrix1 C 0 0 3 0 5 2 0 1 Cluster 23 matrix1 G 0 11 1 2 2 0 0 4 Cluster 23 matrix1 T 13 2 4 11 4 5 4 7 Cluster 23 matrix2 A 0 8 13 3 9 6 0 3 Cluster 23 matrix2 C 5 1 0 10 2 1 0 8 Cluster 23 matrix2 G 2 4 0 0 0 2 12 1 Cluster 23 matrix2 T 6 0 0 0 2 4 1 1 Cluster 24 size 2 strength 35.9068653571687 A 18 consensus TgaAAgga--aggtaGgA Cluster 24 member 62 yndN-m1 yndN align 0-1 A 13 TgtAaagA--agggagta prob 0.999 Cluster 24 member 84 spoIVB-m1 spoIVB align 1-7 A 5 caaAAGGa--GGgTaGGA prob 0.999 Cluster 24 matrix1 A 0 7 8 17 13 8 3 12 Cluster 24 matrix1 C 3 0 3 0 0 0 3 5 Cluster 24 matrix1 G 1 11 1 1 0 9 11 1 Cluster 24 matrix1 T 14 0 6 0 5 1 1 0 Cluster 24 matrix2 A 8 4 3 3 10 0 1 14 Cluster 24 matrix2 C 1 0 3 0 5 0 0 0 Cluster 24 matrix2 G 8 12 8 6 3 14 9 0 Cluster 24 matrix2 T 1 2 4 9 0 4 8 4 Cluster 25 size 2 strength 35.3372939499421 A 18 consensus acTTTtTT--gAgAAaaT Cluster 25 member 18 lrpC-m1 lrpC align 9-6 A 6 acTtTatT--ggGAatat prob 0.999 Cluster 25 member 64 citB-m1 citB align 4-0 A 12 acTTTtTT--gAgAAacT prob 0.999 Cluster 25 matrix1 A 12 2 1 0 1 4 0 1 Cluster 25 matrix1 C 0 9 0 1 2 3 2 2 Cluster 25 matrix1 G 3 3 1 2 0 3 1 0 Cluster 25 matrix1 T 3 4 16 15 15 8 15 15 Cluster 25 matrix2 A 2 13 0 14 13 9 5 1 Cluster 25 matrix2 C 1 0 3 3 0 3 5 1 Cluster 25 matrix2 G 11 4 11 1 3 2 5 2 Cluster 25 matrix2 T 4 1 4 0 2 4 3 14 Cluster 26 size 2 strength 34.8624257080324 A 20 consensus tgCttcaC--tgaAGcaA Cluster 26 member 26 opuE-m1 opuE align 3-6 A 7 taCTTaAC--TtAAGcaA prob 0.998 Cluster 26 member 100 lonB-m1 lonB align 2-9 A 13 agcttccC--ggaAGaaA prob 0.998 Cluster 26 matrix1 A 7 4 0 4 2 8 9 2 Cluster 26 matrix1 C 2 2 16 2 3 10 7 15 Cluster 26 matrix1 G 1 9 1 1 3 2 0 3 Cluster 26 matrix1 T 10 5 3 13 12 0 4 0 Cluster 26 matrix2 A 0 1 13 16 0 6 10 17 Cluster 26 matrix2 C 1 2 2 1 2 8 0 0 Cluster 26 matrix2 G 8 10 5 1 18 4 3 2 Cluster 26 matrix2 T 11 7 0 2 0 2 7 1 Cluster 27 size 2 strength 34.7480990945234 A 40 consensus cattTTTt--AAAaAgcg Cluster 27 member 24 yebB-m2 yebB align 0-0 A 35 cattTTTt--AAAaAgcg prob 0.998 Cluster 27 member 102 araA-m1 araA align 5-0 A 5 cggCTtTt--aAAAaGCc prob 0.991 Cluster 27 matrix1 A 7 18 1 4 3 1 0 12 Cluster 27 matrix1 C 24 3 15 10 7 2 6 4 Cluster 27 matrix1 G 3 17 3 11 0 3 1 0 Cluster 27 matrix1 T 6 2 21 15 30 34 33 24 Cluster 27 matrix2 A 36 39 33 22 28 9 4 0 Cluster 27 matrix2 C 0 0 1 1 11 1 18 10 Cluster 27 matrix2 G 4 1 3 10 1 24 8 20 Cluster 27 matrix2 T 0 0 3 7 0 6 10 10 Cluster 28 size 2 strength 33.9339522140212 A 20 consensus cTcTTtTC--aAatcaga Cluster 28 member 0 bofA-m1 bofA align 0-0 A 8 cTcTTaTC--GAaaaAaa prob 0.995 Cluster 28 member 129 glyA-m1 glyA align 3-1 A 12 ttcTTtTC--AAgtCaga prob 0.995 Cluster 28 matrix1 A 1 0 0 2 1 6 1 0 Cluster 28 matrix1 C 7 5 11 1 3 3 2 20 Cluster 28 matrix1 G 7 1 0 0 0 0 0 0 Cluster 28 matrix1 T 5 14 9 17 16 11 17 0 Cluster 28 matrix2 A 9 19 8 8 4 11 6 11 Cluster 28 matrix2 C 0 1 1 2 10 3 3 4 Cluster 28 matrix2 G 8 0 8 1 6 4 7 2 Cluster 28 matrix2 T 3 0 3 9 0 2 4 3 Cluster 29 size 2 strength 32.868794571131 A 26 consensus aaacaaTT--agaCAAAa Cluster 29 member 8 spoIIE-m2 spoIIE align 7-3 A 13 gAacaaTT--tGaCAaAA prob 0.985 Cluster 29 member 114 ytgA-m1 ytgA align 3-8 A 13 aaacaaTT--atgcAAAa prob 0.985 Cluster 29 matrix1 A 9 17 14 5 14 14 1 0 Cluster 29 matrix1 C 9 2 5 14 2 3 0 2 Cluster 29 matrix1 G 8 5 3 4 4 2 1 0 Cluster 29 matrix1 T 0 2 4 3 6 7 24 24 Cluster 29 matrix2 A 11 4 12 1 23 21 23 17 Cluster 29 matrix2 C 1 1 1 20 1 1 1 5 Cluster 29 matrix2 G 7 15 12 4 2 2 2 0 Cluster 29 matrix2 T 7 6 1 1 0 2 0 4 Cluster 30 size 2 strength 31.3590253171477 A 24 consensus Tttcttat--GtAaGaAG Cluster 30 member 38 yisK-m1 yisK align 1-10 A 9 TTtttgca--agAtGgaG prob 0.936 Cluster 30 member 101 gerE-m1 gerE align 0-0 A 15 TtacttAt--GtAAGaAG prob 0.936 Cluster 30 matrix1 A 1 2 8 2 9 2 15 9 Cluster 30 matrix1 C 1 3 2 13 0 1 5 0 Cluster 30 matrix1 G 0 5 5 1 0 7 1 5 Cluster 30 matrix1 T 22 14 9 8 15 14 3 10 Cluster 30 matrix2 A 5 6 23 14 1 11 18 4 Cluster 30 matrix2 C 1 6 0 1 3 0 2 2 Cluster 30 matrix2 G 18 4 0 2 20 11 2 18 Cluster 30 matrix2 T 0 8 1 7 0 2 2 0